What is another word for GATK?
Pronunciation: [ɡˈatk] (IPA) 
GATK, or the Genome Analysis Toolkit, is a powerful software package that has become an essential tool for many researchers working in the field of genomics. However, there are other tools and platforms that can be used alongside or instead of GATK, depending on your specific research needs. One such tool is SAMtools, which provides a suite of utilities for manipulating and processing SAM and BAM files. Another option is BWA (Burrows-Wheeler Aligner), which is used for aligning short reads to a reference genome. Other synonyms or alternatives to GATK include Picard, FastQC, and VCFtools, each with their own strengths and weaknesses depending on the type of analysis being done.
