There are many synonyms that can be used in place of the phrase "made sense." Some options include "was logical," "had coherence," "was understandable," "made sense logically," "followed a clear pattern," "was comprehensible," "was consistent," "was rationalized," and "was reasoned." These synonyms can be used depending on the context and the tone of the sentence. When conveying a sense of clarity and order, phrases such as "had coherence" and "was consistent" work well, while "was rationalized" and "was reasoned" are better suited for situations where an argument or theory needs to be justified.